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BI2.1-5 | Enzyme — Glossary
Glossary — Enzyme
Key terms introduced in this module. Tap any term to see its explanation in context.
50 yearshook
Without enzymes, digesting a single meal would take about 50 years.
Millions to billionshook
Enzymes speed up these reactions by factors of millions to billions.
Three ways every single dayrelevance
As a doctor, you'll use enzyme knowledge in three ways every single day: 1.
Diagnosisrelevance
Diagnosis — when you order a blood test for a patient with chest pain, you're looking at cardiac enzymes (troponin, CK-MB).
Cardiac enzymesrelevance
Diagnosis — when you order a blood test for a patient with chest pain, you're looking at cardiac enzymes (troponin, CK-MB).
Liver enzymesrelevance
When you suspect liver disease, you check liver enzymes (ALT, AST).
Treatmentrelevance
Treatment — many drugs you'll prescribe work by inhibiting enzymes.
Inhibiting enzymesrelevance
Treatment — many drugs you'll prescribe work by inhibiting enzymes.
Understanding diseaserelevance
Understanding disease — inborn errors of metabolism (like phenylketonuria, galactosaemia) are caused by missing or defective enzymes.
Missing or defective enzymesrelevance
Understanding disease — inborn errors of metabolism (like phenylketonuria, galactosaemia) are caused by missing or defective enzymes.
Catalystrecall
From school chemistry, you learned that a catalyst speeds up a chemical reaction without being consumed.
Activation energyrecall
You also learned that reactions need activation energy — a minimum energy barrier that must be overcome.
Proteinsrecall
From school biology, you know that enzymes are proteins (most of them) and that they are specific — each enzyme acts on a particular substrate.
Specificrecall
From school biology, you know that enzymes are proteins (most of them) and that they are specific — each enzyme acts on a particular substrate.
EnzymeWhat Is an Enzyme? (BI2.1)
An enzyme is a biological catalyst — a molecule (usually a protein) that speeds up a specific chemical reaction without itself being permanently altered.
SpecificityWhat Is an Enzyme? (BI2.1)
- Specificity — each enzyme catalyses a particular reaction on a particular substrate.
SucraseWhat Is an Enzyme? (BI2.1)
The enzyme sucrase only breaks down sucrose; it won't touch lactose.
Active siteWhat Is an Enzyme? (BI2.1)
This specificity comes from the shape of the enzyme's active site — the pocket or cleft where the substrate binds.
EfficiencyWhat Is an Enzyme? (BI2.1)
- Efficiency — enzymes accelerate reactions by factors of 10⁶ to 10¹⁴.
RegulationWhat Is an Enzyme? (BI2.1)
- Regulation — enzyme activity can be turned up or down by the cell.
Mild conditionsWhat Is an Enzyme? (BI2.1)
- Mild conditions — enzymes work at body temperature (~37°C) and physiological pH.
RibozymesWhat Is an Enzyme? (BI2.1)
Most enzymes are proteins, but a few are RNA molecules called ribozymes (e.g., the ribosome's peptidyl transferase activity).
Helper moleculeHoloenzyme, Apoenzyme, Cofactors and Coenzymes (BI2.1)
Many enzymes need a helper molecule to function.
ApoenzymeHoloenzyme, Apoenzyme, Cofactors and Coenzymes (BI2.1)
- Apoenzyme — the protein part of the enzyme alone (inactive without its helper) • Cofactor — the non-protein helper.
CofactorHoloenzyme, Apoenzyme, Cofactors and Coenzymes (BI2.1)
- Cofactor — the non-protein helper.
Inorganic ionHoloenzyme, Apoenzyme, Cofactors and Coenzymes (BI2.1)
An inorganic ion (e.g., Zn²⁺ in carbonic anhydrase, Mg²⁺ in kinases, Fe²⁺ in catalase) An organic molecule — called a coenzyme (e.g.
Organic moleculeHoloenzyme, Apoenzyme, Cofactors and Coenzymes (BI2.1)
An organic molecule — called a coenzyme (e.g., NAD⁺, FAD, coenzyme A, thiamine pyrophosphate) • Holoenzyme = apoenzyme + cofactor (the complete, active enzyme) Apoenzyme + Cofactor → Holoenzyme (active) A coenzyme that is tightly and permanently bound to the enzyme is called.
CoenzymeHoloenzyme, Apoenzyme, Cofactors and Coenzymes (BI2.1)
An organic molecule — called a coenzyme (e.g., NAD⁺, FAD, coenzyme A, thiamine pyrophosphate) • Holoenzyme = apoenzyme + cofactor (the complete, active enzyme) Apoenzyme + Cofactor → Holoenzyme (active) A coenzyme that is tightly and permanently bound to the enzyme is called.
HoloenzymeHoloenzyme, Apoenzyme, Cofactors and Coenzymes (BI2.1)
- Holoenzyme = apoenzyme + cofactor (the complete, active enzyme) Apoenzyme + Cofactor → Holoenzyme (active) A coenzyme that is tightly and permanently bound to the enzyme is called a prosthetic group (e.g., FAD in succinate dehydrogenase — it never leaves the enzyme).
Apoenzyme + Cofactor → Holoenzyme (active)Holoenzyme, Apoenzyme, Cofactors and Coenzymes (BI2.1)
Apoenzyme + Cofactor → Holoenzyme (active) A coenzyme that is tightly and permanently bound to the enzyme is called a prosthetic group (e.g., FAD in succinate dehydrogenase — it never leaves the enzyme).
Prosthetic groupHoloenzyme, Apoenzyme, Cofactors and Coenzymes (BI2.1)
A coenzyme that is tightly and permanently bound to the enzyme is called a prosthetic group (e.g., FAD in succinate dehydrogenase — it never leaves the enzyme).
Co-substrateHoloenzyme, Apoenzyme, Cofactors and Coenzymes (BI2.1)
A coenzyme that binds loosely and acts as a co-substrate (carrying chemical groups between enzymes) is a co-substrate (e.g., NAD⁺ shuttles hydrogen atoms between dehydrogenases).
Why do coenzymes matter?Holoenzyme, Apoenzyme, Cofactors and Coenzymes (BI2.1)
Why do coenzymes matter? Many coenzymes are derived from vitamins: • NAD⁺ and NADP⁺ ← from niacin (vitamin B₃) • FAD ← from riboflavin (vitamin B₂) • Coenzyme A ← from pantothenic acid (vitamin B₅) • Thiamine pyrophosphate (TPP) ← from thiamine (vitamin B₁) • Pyridoxal phosphate.
VitaminsHoloenzyme, Apoenzyme, Cofactors and Coenzymes (BI2.1)
Many coenzymes are derived from vitamins: • NAD⁺ and NADP⁺ ← from niacin (vitamin B₃) • FAD ← from riboflavin (vitamin B₂) • Coenzyme A ← from pantothenic acid (vitamin B₅) • Thiamine pyrophosphate (TPP) ← from thiamine (vitamin B₁) • Pyridoxal phosphate (PLP) ← from pyridoxine.
NiacinHoloenzyme, Apoenzyme, Cofactors and Coenzymes (BI2.1)
- NAD⁺ and NADP⁺ ← from niacin (vitamin B₃) • FAD ← from riboflavin (vitamin B₂) • Coenzyme A ← from pantothenic acid (vitamin B₅) • Thiamine pyrophosphate (TPP) ← from thiamine (vitamin B₁) • Pyridoxal phosphate (PLP) ← from pyridoxine (vitamin B₆) This is why vitamin.
RiboflavinHoloenzyme, Apoenzyme, Cofactors and Coenzymes (BI2.1)
- FAD ← from riboflavin (vitamin B₂) • Coenzyme A ← from pantothenic acid (vitamin B₅) • Thiamine pyrophosphate (TPP) ← from thiamine (vitamin B₁) • Pyridoxal phosphate (PLP) ← from pyridoxine (vitamin B₆) This is why vitamin deficiencies cause disease — without the vitamin,.
Pantothenic acidHoloenzyme, Apoenzyme, Cofactors and Coenzymes (BI2.1)
- Coenzyme A ← from pantothenic acid (vitamin B₅) • Thiamine pyrophosphate (TPP) ← from thiamine (vitamin B₁) • Pyridoxal phosphate (PLP) ← from pyridoxine (vitamin B₆) This is why vitamin deficiencies cause disease — without the vitamin, the coenzyme can't be made, the enzyme.
ThiamineHoloenzyme, Apoenzyme, Cofactors and Coenzymes (BI2.1)
An organic molecule — called a coenzyme (e.g., NAD⁺, FAD, coenzyme A, thiamine pyrophosphate) • Holoenzyme = apoenzyme + cofactor (the complete, active enzyme) Apoenzyme + Cofactor → Holoenzyme (active) A coenzyme that is tightly and permanently bound to the enzyme is called.
PyridoxineHoloenzyme, Apoenzyme, Cofactors and Coenzymes (BI2.1)
- Pyridoxal phosphate (PLP) ← from pyridoxine (vitamin B₆) This is why vitamin deficiencies cause disease — without the vitamin, the coenzyme can't be made, the enzyme can't function, and the metabolic pathway stalls.
Vitamin deficiencies cause diseaseHoloenzyme, Apoenzyme, Cofactors and Coenzymes (BI2.1)
This is why vitamin deficiencies cause disease — without the vitamin, the coenzyme can't be made, the enzyme can't function, and the metabolic pathway stalls.
IsoenzymesIsoenzymes — Same Reaction, Different Tissues (BI2.1)
Isoenzymes (isozymes) are different molecular forms of the same enzyme that catalyse the same reaction but differ in their structure, tissue distribution, or kinetic properties.
Lactate dehydrogenase (LDH)Isoenzymes — Same Reaction, Different Tissues (BI2.1)
The classic example is lactate dehydrogenase (LDH).
5 isoformsIsoenzymes — Same Reaction, Different Tissues (BI2.1)
It exists as 5 isoforms (LDH1–LDH5), each a combination of two subunit types (H for heart, M for muscle): • LDH1 (H₄) — predominates in heart muscle • LDH2 (H₃M) — found in RBCs and heart • LDH3 (H₂M₂) — found in lungs and lymphoid tissue • LDH4 (HM₃) — found in kidneys and.
LDH1Isoenzymes — Same Reaction, Different Tissues (BI2.1)
It exists as 5 isoforms (LDH1–LDH5), each a combination of two subunit types (H for heart, M for muscle): • LDH1 (H₄) — predominates in heart muscle • LDH2 (H₃M) — found in RBCs and heart • LDH3 (H₂M₂) — found in lungs and lymphoid tissue • LDH4 (HM₃) — found in kidneys and.
HeartIsoenzymes — Same Reaction, Different Tissues (BI2.1)
It exists as 5 isoforms (LDH1–LDH5), each a combination of two subunit types (H for heart, M for muscle): • LDH1 (H₄) — predominates in heart muscle • LDH2 (H₃M) — found in RBCs and heart • LDH3 (H₂M₂) — found in lungs and lymphoid tissue • LDH4 (HM₃) — found in kidneys and.
LDH2Isoenzymes — Same Reaction, Different Tissues (BI2.1)
- LDH2 (H₃M) — found in RBCs and heart • LDH3 (H₂M₂) — found in lungs and lymphoid tissue • LDH4 (HM₃) — found in kidneys and placenta • LDH5 (M₄) — predominates in liver and skeletal muscle Clinical use: If a patient's blood shows elevated LDH1 > LDH2 (the 'flipped' LDH.
RBCsIsoenzymes — Same Reaction, Different Tissues (BI2.1)
- LDH2 (H₃M) — found in RBCs and heart • LDH3 (H₂M₂) — found in lungs and lymphoid tissue • LDH4 (HM₃) — found in kidneys and placenta • LDH5 (M₄) — predominates in liver and skeletal muscle Clinical use: If a patient's blood shows elevated LDH1 > LDH2 (the 'flipped' LDH.
LDH3Isoenzymes — Same Reaction, Different Tissues (BI2.1)
- LDH3 (H₂M₂) — found in lungs and lymphoid tissue • LDH4 (HM₃) — found in kidneys and placenta • LDH5 (M₄) — predominates in liver and skeletal muscle Clinical use: If a patient's blood shows elevated LDH1 > LDH2 (the 'flipped' LDH pattern), it suggests myocardial infarction.
LungsIsoenzymes — Same Reaction, Different Tissues (BI2.1)
- LDH3 (H₂M₂) — found in lungs and lymphoid tissue • LDH4 (HM₃) — found in kidneys and placenta • LDH5 (M₄) — predominates in liver and skeletal muscle Clinical use: If a patient's blood shows elevated LDH1 > LDH2 (the 'flipped' LDH pattern), it suggests myocardial infarction.
LDH4Isoenzymes — Same Reaction, Different Tissues (BI2.1)
- LDH4 (HM₃) — found in kidneys and placenta • LDH5 (M₄) — predominates in liver and skeletal muscle Clinical use: If a patient's blood shows elevated LDH1 > LDH2 (the 'flipped' LDH pattern), it suggests myocardial infarction (heart attack).
KidneysIsoenzymes — Same Reaction, Different Tissues (BI2.1)
- LDH4 (HM₃) — found in kidneys and placenta • LDH5 (M₄) — predominates in liver and skeletal muscle Clinical use: If a patient's blood shows elevated LDH1 > LDH2 (the 'flipped' LDH pattern), it suggests myocardial infarction (heart attack).
LDH5Isoenzymes — Same Reaction, Different Tissues (BI2.1)
It exists as 5 isoforms (LDH1–LDH5), each a combination of two subunit types (H for heart, M for muscle): • LDH1 (H₄) — predominates in heart muscle • LDH2 (H₃M) — found in RBCs and heart • LDH3 (H₂M₂) — found in lungs and lymphoid tissue • LDH4 (HM₃) — found in kidneys and.
LiverIsoenzymes — Same Reaction, Different Tissues (BI2.1)
- LDH5 (M₄) — predominates in liver and skeletal muscle Clinical use: If a patient's blood shows elevated LDH1 > LDH2 (the 'flipped' LDH pattern), it suggests myocardial infarction (heart attack).
Skeletal muscleIsoenzymes — Same Reaction, Different Tissues (BI2.1)
- LDH5 (M₄) — predominates in liver and skeletal muscle Clinical use: If a patient's blood shows elevated LDH1 > LDH2 (the 'flipped' LDH pattern), it suggests myocardial infarction (heart attack).
Clinical use:Isoenzymes — Same Reaction, Different Tissues (BI2.1)
Clinical use: If a patient's blood shows elevated LDH1 > LDH2 (the 'flipped' LDH pattern), it suggests myocardial infarction (heart attack).
LDH1 > LDH2Isoenzymes — Same Reaction, Different Tissues (BI2.1)
Clinical use: If a patient's blood shows elevated LDH1 > LDH2 (the 'flipped' LDH pattern), it suggests myocardial infarction (heart attack).
Myocardial infarctionIsoenzymes — Same Reaction, Different Tissues (BI2.1)
Clinical use: If a patient's blood shows elevated LDH1 > LDH2 (the 'flipped' LDH pattern), it suggests myocardial infarction (heart attack).
Liver diseaseIsoenzymes — Same Reaction, Different Tissues (BI2.1)
If LDH5 is elevated, think liver disease.
Creatine kinase (CK)Isoenzymes — Same Reaction, Different Tissues (BI2.1)
Another important isoenzyme: creatine kinase (CK): • CK-MM — skeletal muscle (elevated after muscle injury) • CK-MB — heart muscle (elevated in myocardial infarction) • CK-BB — brain (rarely measured in serum)
CK-MMIsoenzymes — Same Reaction, Different Tissues (BI2.1)
- CK-MM — skeletal muscle (elevated after muscle injury) • CK-MB — heart muscle (elevated in myocardial infarction) • CK-BB — brain (rarely measured in serum)
CK-MBIsoenzymes — Same Reaction, Different Tissues (BI2.1)
- CK-MB — heart muscle (elevated in myocardial infarction) • CK-BB — brain (rarely measured in serum)
CK-BBIsoenzymes — Same Reaction, Different Tissues (BI2.1)
- CK-BB — brain (rarely measured in serum)
Six main classesIUBMB Enzyme Classification — The Six Main Classes (BI2.1)
The International Union of Biochemistry and Molecular Biology (IUBMB) classifies all enzymes into six main classes based on the type of reaction they catalyse.
EC numberIUBMB Enzyme Classification — The Six Main Classes (BI2.1)
Each enzyme gets an EC number (Enzyme Commission number) with four digits.
OxidoreductasesIUBMB Enzyme Classification — The Six Main Classes (BI2.1)
Oxidoreductases | Transfer electrons (oxidation-reduction) | Lactate dehydrogenase, Cytochrome oxidase | "Ox-Red" — they do redox 2.
TransferasesIUBMB Enzyme Classification — The Six Main Classes (BI2.1)
Transferases | Transfer a functional group from one molecule to another | Transaminases (ALT, AST), Kinases | "Transfer" — move a group 3.
HydrolasesIUBMB Enzyme Classification — The Six Main Classes (BI2.1)
Hydrolases | Break bonds using water (hydrolysis) | Lipase, Amylase, Trypsin | "Hydro" — they use water 4.
LyasesIUBMB Enzyme Classification — The Six Main Classes (BI2.1)
Lyases | Break bonds without water or oxidation (or form double bonds) | Aldolase, Decarboxylases | "Lyse" — they cleave 5.
IsomerasesIUBMB Enzyme Classification — The Six Main Classes (BI2.1)
Isomerases | Rearrange atoms within a molecule (isomerisation) | Phosphoglucose isomerase, Racemases | "Iso" — they shuffle 6.
LigasesIUBMB Enzyme Classification — The Six Main Classes (BI2.1)
Ligases | Join two molecules using ATP energy | DNA ligase, Glutamine synthetase | "Ligate" — they join (like a surgical ligature) | Mnemonic for the order: "Over The Hill, Liz Is Lazy" (Oxidoreductases, Transferases, Hydrolases, Lyases, Isomerases, Ligases).
Mnemonic for the order: "Over The Hill, Liz Is Lazy"IUBMB Enzyme Classification — The Six Main Classes (BI2.1)
Mnemonic for the order: "Over The Hill, Liz Is Lazy" (Oxidoreductases, Transferases, Hydrolases, Lyases, Isomerases, Ligases).
1. Lock-and-Key ModelLock-and-Key vs Induced Fit — How the Substrate Meets the Enzyme (BI2.2)
- Lock-and-Key Model (Emil Fischer, 1894) The substrate fits into the enzyme's active site like a key into a lock — the shapes are perfectly complementary before binding.
2. Induced Fit ModelLock-and-Key vs Induced Fit — How the Substrate Meets the Enzyme (BI2.2)
- Induced Fit Model (Daniel Koshland, 1958) — the currently accepted model The active site is not rigid — it's flexible.
Not rigidLock-and-Key vs Induced Fit — How the Substrate Meets the Enzyme (BI2.2)
The active site is not rigid — it's flexible.
Similar substratesLock-and-Key vs Induced Fit — How the Substrate Meets the Enzyme (BI2.2)
The induced fit model explains why some enzymes can act on similar substrates (the hand can grip different-sized balls) and why binding actually promotes catalysis (the conformational change contributes to lowering activation energy).
Think of it this way:Lock-and-Key vs Induced Fit — How the Substrate Meets the Enzyme (BI2.2)
Think of it this way: Lock-and-key = a rigid lock; Induced fit = a smart lock that adjusts its shape when the right key approaches.
1. TemperatureFactors Affecting Enzyme Activity (BI2.2)
- Temperature • Enzyme activity increases with temperature (molecules move faster, more collisions) up to an optimum temperature (~37°C for human enzymes).
Optimum temperatureFactors Affecting Enzyme Activity (BI2.2)
- Enzyme activity increases with temperature (molecules move faster, more collisions) up to an optimum temperature (~37°C for human enzymes).
DenaturesFactors Affecting Enzyme Activity (BI2.2)
- Above the optimum, the enzyme denatures — the protein unfolds, the active site loses its shape, and activity drops to zero.
FeverFactors Affecting Enzyme Activity (BI2.2)
- Clinical link: This is why fever above 41°C is dangerous — enzymes start to denature.
2. pHFactors Affecting Enzyme Activity (BI2.2)
- pH • Each enzyme has an optimum pH where it works best.
Optimum pHFactors Affecting Enzyme Activity (BI2.2)
- Each enzyme has an optimum pH where it works best.
3. Substrate concentrationFactors Affecting Enzyme Activity (BI2.2)
- Substrate concentration • At low substrate concentration, adding more substrate increases the rate (more active sites are occupied).
SaturatedFactors Affecting Enzyme Activity (BI2.2)
- At high substrate concentration, all active sites are occupied — the enzyme is saturated — and the rate reaches a maximum (Vmax).
Maximum (Vmax)Factors Affecting Enzyme Activity (BI2.2)
- At high substrate concentration, all active sites are occupied — the enzyme is saturated — and the rate reaches a maximum (Vmax).
4. Enzyme concentrationFactors Affecting Enzyme Activity (BI2.2)
- Enzyme concentration • If substrate is in excess, doubling the enzyme concentration doubles the rate (more active sites available).
5. Inhibitors and activatorsFactors Affecting Enzyme Activity (BI2.2)
- Inhibitors and activators — covered in Part 3.
Reaction rate (v)Michaelis-Menten Kinetics — Km and Vmax Made Intuitive (BI2.2)
When you plot reaction rate (v) against substrate concentration [S], you get a characteristic hyperbolic curve that levels off.
Substrate concentration [S]Michaelis-Menten Kinetics — Km and Vmax Made Intuitive (BI2.2)
When you plot reaction rate (v) against substrate concentration [S], you get a characteristic hyperbolic curve that levels off.
Hyperbolic curveMichaelis-Menten Kinetics — Km and Vmax Made Intuitive (BI2.2)
When you plot reaction rate (v) against substrate concentration [S], you get a characteristic hyperbolic curve that levels off.
Michaelis-Menten equationMichaelis-Menten Kinetics — Km and Vmax Made Intuitive (BI2.2)
This curve is described by the Michaelis-Menten equation, but you need to understand just two numbers: Vmax — the maximum rate of the reaction, achieved when every enzyme molecule has a substrate bound to it (the enzyme is fully saturated).
VmaxMichaelis-Menten Kinetics — Km and Vmax Made Intuitive (BI2.2)
Vmax — the maximum rate of the reaction, achieved when every enzyme molecule has a substrate bound to it (the enzyme is fully saturated).
Maximum rateMichaelis-Menten Kinetics — Km and Vmax Made Intuitive (BI2.2)
Vmax — the maximum rate of the reaction, achieved when every enzyme molecule has a substrate bound to it (the enzyme is fully saturated).
Km (Michaelis constant)Michaelis-Menten Kinetics — Km and Vmax Made Intuitive (BI2.2)
Km (Michaelis constant) — the substrate concentration at which the reaction rate is half of Vmax (½Vmax).
Half of VmaxMichaelis-Menten Kinetics — Km and Vmax Made Intuitive (BI2.2)
Km (Michaelis constant) — the substrate concentration at which the reaction rate is half of Vmax (½Vmax).
Low KmMichaelis-Menten Kinetics — Km and Vmax Made Intuitive (BI2.2)
- Low Km = the enzyme reaches half-speed at a low substrate concentration = it binds substrate tightly = high affinity • High Km = the enzyme needs a lot of substrate to reach half-speed = it binds substrate loosely = low affinity Analogy: Imagine a taxi (enzyme) picking up.
High affinityMichaelis-Menten Kinetics — Km and Vmax Made Intuitive (BI2.2)
- Low Km = the enzyme reaches half-speed at a low substrate concentration = it binds substrate tightly = high affinity • High Km = the enzyme needs a lot of substrate to reach half-speed = it binds substrate loosely = low affinity Analogy: Imagine a taxi (enzyme) picking up.
High KmMichaelis-Menten Kinetics — Km and Vmax Made Intuitive (BI2.2)
- High Km = the enzyme needs a lot of substrate to reach half-speed = it binds substrate loosely = low affinity Analogy: Imagine a taxi (enzyme) picking up passengers (substrates) on a street.
Low affinityMichaelis-Menten Kinetics — Km and Vmax Made Intuitive (BI2.2)
- High Km = the enzyme needs a lot of substrate to reach half-speed = it binds substrate loosely = low affinity Analogy: Imagine a taxi (enzyme) picking up passengers (substrates) on a street.
Analogy:Michaelis-Menten Kinetics — Km and Vmax Made Intuitive (BI2.2)
Analogy: Imagine a taxi (enzyme) picking up passengers (substrates) on a street.
What changes Vmax?Michaelis-Menten Kinetics — Km and Vmax Made Intuitive (BI2.2)
What changes Vmax? • Increasing enzyme concentration increases Vmax (more taxis = more capacity) • Vmax is NOT changed by adding more substrate — it's already at maximum What changes Km?
What changes Km?Michaelis-Menten Kinetics — Km and Vmax Made Intuitive (BI2.2)
What changes Km? • Km is an intrinsic property of the enzyme-substrate pair — it doesn't change with enzyme concentration • Inhibitors can alter the apparent Km (we'll see how in Part 3)
Lower Km = higher affinity.micro_quiz
Lower Km = higher affinity. Enzyme X reaches half its maximum speed at just 0.1 mM substrate, meaning it grabs onto the substrate very efficiently.
Enzyme inhibitorEnzyme Inhibition — How Drugs Block Enzymes (BI2.3)
An enzyme inhibitor is a molecule that reduces enzyme activity.
Reversible InhibitionEnzyme Inhibition — How Drugs Block Enzymes (BI2.3)
Reversible Inhibition (the inhibitor binds and releases): 1.
1. Competitive InhibitionEnzyme Inhibition — How Drugs Block Enzymes (BI2.3)
- Competitive Inhibition • The inhibitor resembles the substrate and competes for the active site • It's like a wrong key stuck in a lock — the real key (substrate) can't get in • Effect on kinetics: Km increases (you need more substrate to outcompete the inhibitor), but Vmax.
Effect on kinetics:Enzyme Inhibition — How Drugs Block Enzymes (BI2.3)
- Effect on kinetics: Km increases (you need more substrate to outcompete the inhibitor), but Vmax is unchanged (with enough substrate, you can overwhelm the inhibitor) • Drug example: Methotrexate — resembles folic acid and competitively inhibits dihydrofolate reductase (used.
MethotrexateEnzyme Inhibition — How Drugs Block Enzymes (BI2.3)
- Drug example: Methotrexate — resembles folic acid and competitively inhibits dihydrofolate reductase (used in cancer chemotherapy).
StatinsEnzyme Inhibition — How Drugs Block Enzymes (BI2.3)
Statins — competitively inhibit HMG-CoA reductase (used to lower cholesterol).
2. Non-competitive InhibitionEnzyme Inhibition — How Drugs Block Enzymes (BI2.3)
- Non-competitive Inhibition • The inhibitor binds to a site other than the active site (an allosteric site) • It changes the enzyme's shape so the active site no longer works properly • It's like someone bending your lock — even with the right key, the lock won't turn •.
Allosteric siteEnzyme Inhibition — How Drugs Block Enzymes (BI2.3)
- The inhibitor binds to a site other than the active site (an allosteric site) • It changes the enzyme's shape so the active site no longer works properly • It's like someone bending your lock — even with the right key, the lock won't turn • Effect on kinetics: Vmax decreases.
Heavy metalsEnzyme Inhibition — How Drugs Block Enzymes (BI2.3)
- Drug example: Heavy metals (lead, mercury) — bind to sulfhydryl groups on enzymes, distorting their shape.
3. Uncompetitive InhibitionEnzyme Inhibition — How Drugs Block Enzymes (BI2.3)
- Uncompetitive Inhibition (less common) • The inhibitor binds only to the enzyme-substrate complex (not to the free enzyme) • Effect: Both Km and Vmax decrease Irreversible Inhibition (the inhibitor binds permanently, destroying the enzyme): • Drug example: Aspirin —.
Effect:Enzyme Inhibition — How Drugs Block Enzymes (BI2.3)
- Effect: Both Km and Vmax decrease Irreversible Inhibition (the inhibitor binds permanently, destroying the enzyme): • Drug example: Aspirin — irreversibly acetylates cyclooxygenase (COX), blocking prostaglandin synthesis.
Irreversible InhibitionEnzyme Inhibition — How Drugs Block Enzymes (BI2.3)
Irreversible Inhibition (the inhibitor binds permanently, destroying the enzyme): • Drug example: Aspirin — irreversibly acetylates cyclooxygenase (COX), blocking prostaglandin synthesis.
AspirinEnzyme Inhibition — How Drugs Block Enzymes (BI2.3)
- Drug example: Aspirin — irreversibly acetylates cyclooxygenase (COX), blocking prostaglandin synthesis.
OrganophosphatesEnzyme Inhibition — How Drugs Block Enzymes (BI2.3)
- Organophosphates (nerve agents, some pesticides) — irreversibly inhibit acetylcholinesterase, causing a buildup of acetylcholine at nerve junctions.
Drugs themselvesEnzymes as Therapeutic Agents (BI2.3)
Enzymes aren't just drug targets — some are used as drugs themselves: • Streptokinase and tissue plasminogen activator (tPA) — dissolve blood clots by activating plasminogen → plasmin, which digests fibrin.
Streptokinase and tissue plasminogen activator (tPA)Enzymes as Therapeutic Agents (BI2.3)
- Streptokinase and tissue plasminogen activator (tPA) — dissolve blood clots by activating plasminogen → plasmin, which digests fibrin.
Acute myocardial infarctionEnzymes as Therapeutic Agents (BI2.3)
Used in acute myocardial infarction and stroke (the 'clot-buster' drugs).
StrokeEnzymes as Therapeutic Agents (BI2.3)
Used in acute myocardial infarction and stroke (the 'clot-buster' drugs).
L-AsparaginaseEnzymes as Therapeutic Agents (BI2.3)
- L-Asparaginase — breaks down asparagine (an amino acid).
Acute lymphoblastic leukaemia, ALLEnzymes as Therapeutic Agents (BI2.3)
Some cancer cells (especially in acute lymphoblastic leukaemia, ALL) cannot synthesise asparagine and depend on blood supply.
Pancreatic enzyme supplementsEnzymes as Therapeutic Agents (BI2.3)
- Pancreatic enzyme supplements (lipase, amylase, protease) — given to patients with chronic pancreatitis or cystic fibrosis who cannot produce enough digestive enzymes.
Chronic pancreatitisEnzymes as Therapeutic Agents (BI2.3)
- Pancreatic enzyme supplements (lipase, amylase, protease) — given to patients with chronic pancreatitis or cystic fibrosis who cannot produce enough digestive enzymes.
Cystic fibrosisEnzymes as Therapeutic Agents (BI2.3)
- Pancreatic enzyme supplements (lipase, amylase, protease) — given to patients with chronic pancreatitis or cystic fibrosis who cannot produce enough digestive enzymes.
Α-Galactosidase (Beano®)Enzymes as Therapeutic Agents (BI2.3)
- α-Galactosidase (Beano®) — breaks down oligosaccharides in beans that humans can't digest, reducing flatulence.
Enzyme replacement therapyEnzymes as Therapeutic Agents (BI2.3)
Enzymes are also used therapeutically in enzyme replacement therapy for genetic enzyme deficiencies (e.g., imiglucerase for Gaucher disease, agalsidase for Fabry disease).
Competitive inhibitionmicro_quiz
This is competitive inhibition — the drug competes with the real substrate for the active site.
Km increasesmicro_quiz
Km increases (you need more substrate to achieve ½Vmax because the inhibitor is blocking some active sites) but Vmax is unchanged (with enough substrate, you can outcompete the inhibitor and saturate all enzymes).
Vmax is unchangedmicro_quiz
Km increases (you need more substrate to achieve ½Vmax because the inhibitor is blocking some active sites) but Vmax is unchanged (with enough substrate, you can outcompete the inhibitor and saturate all enzymes).
Serum enzymesClinical Enzymes — Serum Markers of Disease (BI2.4)
By measuring these serum enzymes, doctors can identify which organ is damaged and how severely.
Cardiac markers (Myocardial Infarction):Clinical Enzymes — Serum Markers of Disease (BI2.4)
Cardiac markers (Myocardial Infarction): • Troponin I and T — the gold standard.
Troponin I and TClinical Enzymes — Serum Markers of Disease (BI2.4)
- Troponin I and T — the gold standard.
Re-infarctionClinical Enzymes — Serum Markers of Disease (BI2.4)
Useful for detecting re-infarction because it normalises quickly.
Liver function tests (LFTs):Clinical Enzymes — Serum Markers of Disease (BI2.4)
Liver function tests (LFTs): • ALT (SGPT) — most specific for liver.
ALT (SGPT)Clinical Enzymes — Serum Markers of Disease (BI2.4)
- ALT (SGPT) — most specific for liver.
AST (SGOT)Clinical Enzymes — Serum Markers of Disease (BI2.4)
- AST (SGOT) — found in liver, heart, and muscle.
AST:ALT ratioClinical Enzymes — Serum Markers of Disease (BI2.4)
The AST:ALT ratio (De Ritis ratio) helps differentiate: ratio >2 suggests alcoholic liver disease; ratio <1 suggests viral hepatitis.
Alcoholic liver diseaseClinical Enzymes — Serum Markers of Disease (BI2.4)
The AST:ALT ratio (De Ritis ratio) helps differentiate: ratio >2 suggests alcoholic liver disease; ratio <1 suggests viral hepatitis.
Viral hepatitisClinical Enzymes — Serum Markers of Disease (BI2.4)
The AST:ALT ratio (De Ritis ratio) helps differentiate: ratio >2 suggests alcoholic liver disease; ratio <1 suggests viral hepatitis.
ALP (Alkaline Phosphatase)Clinical Enzymes — Serum Markers of Disease (BI2.4)
- ALP (Alkaline Phosphatase) — elevated in obstructive jaundice (bile duct blockage) and bone disease (Paget's disease, rickets, bone metastases).
Obstructive jaundiceClinical Enzymes — Serum Markers of Disease (BI2.4)
- ALP (Alkaline Phosphatase) — elevated in obstructive jaundice (bile duct blockage) and bone disease (Paget's disease, rickets, bone metastases).
Bone diseaseClinical Enzymes — Serum Markers of Disease (BI2.4)
- ALP (Alkaline Phosphatase) — elevated in obstructive jaundice (bile duct blockage) and bone disease (Paget's disease, rickets, bone metastases).
GGT (Gamma-glutamyl transferase)Clinical Enzymes — Serum Markers of Disease (BI2.4)
- GGT (Gamma-glutamyl transferase) — elevated in alcoholic liver disease and biliary obstruction.
Biliary obstructionClinical Enzymes — Serum Markers of Disease (BI2.4)
- GGT (Gamma-glutamyl transferase) — elevated in alcoholic liver disease and biliary obstruction.
Pancreatic markers:Clinical Enzymes — Serum Markers of Disease (BI2.4)
Pancreatic markers: • Amylase — rises within hours of acute pancreatitis, returns to normal in 3–5 days.
AmylaseClinical Enzymes — Serum Markers of Disease (BI2.4)
- Amylase — rises within hours of acute pancreatitis, returns to normal in 3–5 days.
Acute pancreatitisClinical Enzymes — Serum Markers of Disease (BI2.4)
- Amylase — rises within hours of acute pancreatitis, returns to normal in 3–5 days.
LipaseClinical Enzymes — Serum Markers of Disease (BI2.4)
- Lipase — more specific for pancreatitis than amylase, stays elevated longer (7–14 days).
Bone and prostate:Clinical Enzymes — Serum Markers of Disease (BI2.4)
Bone and prostate: • Acid phosphatase — was previously used for prostate cancer (now replaced by PSA, which is not an enzyme).
Acid phosphataseClinical Enzymes — Serum Markers of Disease (BI2.4)
- Acid phosphatase — was previously used for prostate cancer (now replaced by PSA, which is not an enzyme).
Prostate cancerClinical Enzymes — Serum Markers of Disease (BI2.4)
- Acid phosphatase — was previously used for prostate cancer (now replaced by PSA, which is not an enzyme).
ALP (bone isoform)Clinical Enzymes — Serum Markers of Disease (BI2.4)
- ALP (bone isoform) — elevated in bone diseases with increased osteoblast activity.
Scenario 1: Chest pain + elevated Troponin + elevated CK-MBInterpreting Enzyme Results — Putting It Together (BI2.5)
Scenario 1: Chest pain + elevated Troponin + elevated CK-MB → Troponin is specific for heart muscle.
Acute viral hepatitisInterpreting Enzyme Results — Putting It Together (BI2.5)
→ Very high ALT + AST:ALT ratio <1 = acute viral hepatitis (hepatocyte damage releasing transaminases).
The De Ritis Ratio (AST:ALT)clinical_pearl
The De Ritis Ratio (AST:ALT) is a simple but powerful diagnostic tool: • Ratio < 1 (ALT > AST): Think viral hepatitis — hepatocytes are damaged, releasing their abundant ALT.
Ratio < 1clinical_pearl
- Ratio < 1 (ALT > AST): Think viral hepatitis — hepatocytes are damaged, releasing their abundant ALT.
Ratio > 2clinical_pearl
- Ratio > 2 (AST >> ALT): Think alcoholic liver disease — alcohol depletes hepatic ALT (via pyridoxal phosphate depletion) while AST from mitochondrial damage remains elevated.
Ratio 1–2clinical_pearl
- Ratio 1–2: Non-specific — could be cirrhosis, non-alcoholic fatty liver, or other causes.
Enzyme in your daily life:reflection
Enzyme in your daily life: You ate your last meal several hours ago.
Km in action:reflection
Km in action: Your cells have two enzymes that can phosphorylate glucose: hexokinase (Km = 0.1 mM) and glucokinase (Km = 10 mM).
Hexokinasereflection
Km in action: Your cells have two enzymes that can phosphorylate glucose: hexokinase (Km = 0.1 mM) and glucokinase (Km = 10 mM).
Glucokinasereflection
Km in action: Your cells have two enzymes that can phosphorylate glucose: hexokinase (Km = 0.1 mM) and glucokinase (Km = 10 mM).
Drug design:reflection
Drug design: If you were designing a drug to block a specific enzyme, would you choose a competitive or non-competitive inhibitor?
Key takeaways — your study checklist:summary
Key takeaways — your study checklist: 1.
Enzymessummary
Enzymes are biological catalysts (mostly proteins) that lower activation energy.
IUBMB classification:summary
IUBMB classification: 6 classes — Oxidoreductases, Transferases, Hydrolases, Lyases, Isomerases, Ligases.
Active site models:summary
Active site models: Lock-and-key (rigid) vs Induced fit (flexible, currently accepted).
Km and Vmax:summary
Km and Vmax: Vmax = maximum rate at saturation.
Inhibition:summary
Inhibition: Competitive (active site, ↑Km, Vmax same; e.g., statins).
Clinical enzymes:summary
Clinical enzymes: Troponin + CK-MB = MI.
172 terms in this module