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PA23.9 | GI Morphology — Practical — SDL Guide

Learning Objectives

  • Describe the gross and microscopic features of peptic ulcer, including the four-zone histological pattern.
  • Identify and distinguish the microscopic features of TB, Crohn disease, ulcerative colitis, and typhoid ulcers.
  • Recognise microscopic patterns of common GI tumours: oesophageal SCC, gastric adenocarcinoma (intestinal and diffuse types), colorectal adenocarcinoma, and adenomatous polyps.
  • Distinguish benign inflammatory ulcers from malignant ulcers using gross and microscopic criteria.
  • Apply a systematic approach — site → gross pattern → micro architecture → diagnostic label — when reading GI specimens.

INSTRUCTIONS

In Pathology practical examinations, GI specimens are among the most commonly tested. Being able to read a slide or photograph systematically and name the lesion — rather than memorising isolated facts — is the skill examiners test. This module walks you through each major GI entity with specimen-reading checkpoints so you can practise the thought process, not just recall the criteria.

References

  • Robbins & Cotran Pathologic Basis of Disease, 10th ed., Ch 17 (Gastrointestinal Tract) (textbook)
  • Harsh Mohan Textbook of Pathology, 8th ed., Ch 19 (GI Tract) (textbook)

Version 2.0 | NMC CBUC 2024

CLINICAL SCENARIO

You are handed a glass slide labelled 'stomach biopsy'. Under low power you see a large area of ulceration with layered zones beneath it. Under high power one zone shows actively proliferating capillaries and fibroblasts, and the deepest zone is dense, hypocellular, pink collagen. A nearby slide is labelled 'colorectum' and shows irregular, gland-forming epithelium with central dirty necrosis in the lumen. Two completely different diseases — yet the practical exam will ask you to name both in under two minutes. This module gives you the reading framework that makes that possible.

RECALL

Before starting, anchor your baseline:

  1. What are the four layers of the bowel wall from mucosa outward?
  2. Where in the stomach does peptic ulcer most commonly occur, and which nerve supplies the parietal cell?
  3. Name one microscopic difference between an intestinal-type and a diffuse-type carcinoma.

If any of these pause you, revisit your GI anatomy and SDL 1 (Normal Histology) before proceeding — they are the skeleton on which this module hangs.

The Systematic Reading Approach

A five-panel pathology diagram shows how to read a gastrointestinal specimen systematically from site identification through gross features, microscopy, benign-versus-malignant assessment, and final diagnosis.

Systematic Reading Approach for GI Specimens

Panel A: GI tract site map showing oesophagus, stomach body, stomach antrum, small bowel, and large bowel. Panel B: Gross peptic ulcer features: sharply punched-out edge, clean smooth base, radiating mucosal folds, lesser curvature near antrum-body junction. Panel C: Low-power ulcer histology showing ulcer depth, necrotic debris, inflammatory zone, granulation tissue, fibrosis, mucosa, submucosa, muscularis propria, and serosa. Panel D: Benign versus malignant checkpoint showing preserved crypt architecture, cytological atypia, and invasion beyond muscularis mucosae. Panel E: Five-step diagnostic scaffold: site, gross pattern, micro architecture, benign versus malignant, and name the lesion.

Every GI specimen — ulcer, tumour, or polyp — yields a diagnosis if you apply the same five-step scaffold:

  1. Site: Oesophagus? Stomach (body vs antrum)? Small bowel? Large bowel? The site constrains the differential immediately.
  2. Gross pattern: Single or multiple? Size and shape? Edge (punched-out vs rolled/heaped-up)? Base (clean vs necrotic)? Mucosal folds (converging vs destroyed)?
  3. Micro architecture (low power first): Ulceration depth (mucosal vs transmural)? Layered zones? Granuloma present? Gland formation? Mucin pattern?
  4. Benign/inflammatory vs malignant: Preserved crypt architecture? Cytological atypia? Invasion beyond muscularis mucosae?
  5. Name the lesion: Commit to the diagnosis using the features gathered above.

Training yourself to narrate these five steps — even on a photograph in an exam — prevents the most common student error: jumping to a memorised label without reading the slide.

Peptic Ulcer — Gross Features

Diagram comparing benign peptic ulcer gross features with malignant ulcer features, emphasizing punched-out edges, clean base, converging folds, and typical location.

Peptic Ulcer: Gross Features and Malignant Ulcer Contrast

Panel A: Opened stomach showing lesser curvature, antrum/body junction, round-to-oval benign peptic ulcer, sharply punched-out edge, clean smooth base, and converging radiating mucosal folds.. Panel B: Cross-sectional comparison of benign punched-out ulcer edge versus malignant heaped-up everted irregular edge with necrotic base.. Panel C: Four-cell exam comparison table covering edges, base, surrounding folds, and size for benign peptic ulcer versus malignant ulcer..

A peptic ulcer on gross examination has a set of features that together distinguish it from a malignant ulcer.

Benign (peptic) ulcer gross checklist:
- Size: usually ≤2 cm (most), rarely >3 cm
- Shape: round to oval, occasionally linear
- Edges: sharply punched-out, overhanging edge absent
- Base: clean, smooth — often described as 'floor of an operating theatre'
- Surrounding mucosa: folds converge towards the ulcer margin ('radiating folds')
- Location: most common on the lesser curvature of the antrum/body junction; first part of duodenum

Contrast this with a malignant (carcinomatous) ulcer: heaped-up, irregular, everted edges; necrotic, dirty base; surrounding folds are blunted, do not converge, or are destroyed.

IMPORTANT: This gross distinction is tested frequently — learn it as a 4-cell comparison table.

FeatureBenignMalignant
EdgesPunched-out, sharpHeaped-up, everted
BaseClean, smoothNecrotic, irregular
Surrounding foldsConvergingDestroyed / blunted
SizeUsually ≤2 cmOften >3 cm

SELF-CHECK

A gastric resection specimen shows a 1.8 cm ulcer on the lesser curvature with sharply cut edges, a smooth pale base, and mucosal folds converging towards the margin. Which single gross feature most reliably supports a benign peptic ulcer over a malignant ulcer?

A. Size less than 2 cm

B. Converging mucosal folds

C. Smooth pale base

D. Location on the lesser curvature

Reveal Answer

Answer: B. Converging mucosal folds

Converging (radiating) mucosal folds are the most discriminating gross feature — they indicate that the surrounding mucosa is intact and contracting toward the ulcer, which occurs in reactive fibrosis of a benign peptic ulcer. Malignant ulcers destroy or disrupt these folds. Size <2 cm, smooth base, and lesser-curvature location are all supportive but individually less specific (small malignant ulcers and early carcinoma can share any one of these).

Peptic Ulcer — The Four Histological Zones

Diagram of an active peptic ulcer showing four histological zones from luminal fibrinopurulent exudate through inflammation and granulation tissue to deep fibrous scar.

Peptic Ulcer: Four Histological Zones

Panel A: Low-power H&E-style cross-section showing lumen surface, Zone 1 fibrinopurulent necrotic exudate, Zone 2 non-specific inflammatory infiltrate, Zone 3 granulation tissue, Zone 4 fibrous scar tissue, deep ulcer base, and numbered arrows to each zone.. Panel B: Magnified Zone 1 showing fibrin strands, necrotic cell debris, neutrophils, and bright eosinophilic surface exudate.. Panel C: Magnified Zone 2 showing oedema, vascular dilatation, neutrophils, and mononuclear inflammatory cells.. Panel D: Magnified Zone 3 showing proliferating capillary buds, plump fibroblasts, and mixed inflammatory cells indicating active healing.. Panel E: Magnified Zone 4 showing dense hypocellular collagen scar tissue and an artery with endarteritis obliterans, thickened hyalinised wall, and narrowed lumen..

Under the microscope a peptic ulcer in its active phase shows four concentric zones from the lumen surface downward. Memorise them in order — the exam question usually asks you to label or sequence them.

Zone 1 — Fibrinopurulent necrotic exudate: The luminal surface. Fibrin, dead cell debris, neutrophils. Bright eosinophilic smear on H&E.

Zone 2 — Non-specific inflammatory infiltrate: Beneath the exudate. Oedema, vascular dilatation, neutrophils and mononuclear cells. Granulation tissue beginning to form at its lower border.

Zone 3 — Granulation tissue: Proliferating capillaries (endothelial buds), plump fibroblasts, mixed inflammatory cells. This zone indicates active healing attempt.

Zone 4 — Fibrous/scar tissue: The deepest zone. Dense, hypocellular collagen. In a chronic ulcer this layer is thick and may include arteries with endarteritis obliterans (thickened, hyalinised walls — this is why peptic ulcer bleeds: the artery cannot contract when eroded).

IMPORTANT: A healing ulcer shows zones 3 and 4 predominating with surface re-epithelialisation. An acute ulcer may lack a well-formed zone 4.

Annotated H&E-style peptic ulcer histology showing four vertical zones from surface necrotic exudate to deep fibrotic scar, with magnified insets of granulation tissue and scar.

Histologic Zones of Chronic Peptic Ulcer

Panel A: Low-power peptic ulcer crater with numbered zones: 1 fibrinopurulent necrotic exudate, 2 non-specific inflammatory infiltrate, 3 granulation tissue with capillary buds and fibroblasts, 4 fibrotic scar base.. Panel B1: High-power detail of granulation tissue showing proliferating capillary buds, endothelial cells, fibroblasts, and mixed inflammatory cells.. Panel B2: High-power detail of fibrotic scar base showing dense hypocellular collagen, sparse fibrocytes, and pink eosinophilic scar tissue..

SELF-CHECK

On a peptic ulcer section you see plump spindle cells, delicate new capillaries, and mixed inflammatory cells in the middle layers of the ulcer floor. Which zone are you viewing, and what is its clinical significance?

A. Zone 1 (fibrinopurulent exudate) — indicates active bacterial infection

B. Zone 2 (non-specific inflammation) — indicates chronicity

C. Zone 3 (granulation tissue) — indicates healing attempt

D. Zone 4 (fibrosis) — indicates erosion of a vessel wall

Reveal Answer

Answer: C. Zone 3 (granulation tissue) — indicates healing attempt

Zone 3 is granulation tissue: proliferating capillary endothelial buds + fibroblasts + mixed inflammatory cells. Its presence confirms an active healing response. Zones are in order from the lumen down (1→4), so granulation tissue sits in the mid-floor. Zone 4 (fibrosis/scar) is the deepest; it is the layer in which arteries with endarteritis obliterans are found, making haemorrhage the key risk when this zone erodes.